PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001373-PA
Common NameOsI_02504
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 366aa    MW: 39379.3 Da    PI: 4.6866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001373-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.37.7e-2622132199
            DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA...........earardPvyGavgvil 81 
                       +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+ +FG+++vl+l +++ +e  +d++ss+vyeA           ea+ rdPv G +gv+ 
  BGIOSGA001373-PA  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVELVFGMRKVLELAHKAGPEYLDDILSSIVYEAvttsppastkaEAWGRDPVWGPTGVVG 114
                       6***********9877************************************************954444444444489************** PP

            DUF260  82 klqqqleqlkaelallke 99 
                       +l+ ++ +++a+la+l+ 
  BGIOSGA001373-PA 115 ALELEIGTARADLAVLQG 132
                       *************99876 PP
2DUF260112.33.3e-35184275191
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  BGIOSGA001373-PA 184 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 275
                       6***********************9978************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.89321134IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-2122131IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089119.221183285IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-28184275IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVELVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAVTT SPPASTKAEA WGRDPVWGPT GVVGALELEI  120
GTARADLAVL QGQDQDQPPA VATLPKPELV VHPPTMAQDE SKPSSTTSSS SGTTTTTTKK  180
NKPRCAACRY LSRSCWPECL LAPYFPAGQP PAQFGNVHRL FRLNNVLRMM EETRREERDD  240
LMAAIVYEAD AWARDPRYGV AGVVRSLTNE LARVRLDEIA FHLLGTDETY DGYKEEDALA  300
VDPVSGAQAG IGVLGGSGAD LQENTGILLG ADEPGPGELA VDPIKDVFDI DRLLAVDDDL  360
SSGTQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-202328212108LOB family transfactor Ramosa2.1
5ly0_B1e-202328212108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.10.0uncharacterized protein LOC107278430
RefseqXP_025882396.10.0uncharacterized protein LOC107278430
TrEMBLA2WRM00.0A2WRM0_ORYSI; Uncharacterized protein
STRINGORGLA01G0166300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.49e-19LBD family protein