PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001349-PA
Common NameOsI_02563
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 443aa    MW: 48677.1 Da    PI: 4.7885
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001349-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.33.3e-2721120197
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       q+  fw ++   ie+++df +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +d
  BGIOSGA001349-PA  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYD 113
                       68899*765566********************************************************************************* PP

             NF-YC  91 flvdivp 97 
                       flvdi  
  BGIOSGA001349-PA 114 FLVDILR 120
                       ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.64E-1628121IPR009072Histone-fold
PfamPF008082.0E-944106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEQTLDVPRS LRLPAPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAKAIASTE SYDFLVDILR  120
NHCVKHKSTP CSTLTTKRCR LVDQPSTSHM PYQHQLPQFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSPMMASAP IVNRSMLLIH NIARGLSLQG NNISTFANNN IPDNIVGFSS  240
PAVLASMMSP ALLEVAGTSL NPPNSHSICT MNMINSSDPS GSSVGDINVA NQASLAPSGH  300
FNPAILRESS CPSFLHSNNN DTIVAIPEGV DISGTMDVAS DVAAIVINGQ EEHERETNVE  360
HHQQNEIYES IDIGIINASV ADGNKCSISW DELGMADDSL LDKFLEEFQV RNDGVLCTGI  420
ELHEDPFLGD VMLEIPSTSN ANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-1831119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.893080.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160114850.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621622.10.0uncharacterized protein LOC4324193 isoform X1
TrEMBLA2WRS20.0A2WRS2_ORYSI; Uncharacterized protein
STRINGONIVA01G23150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-24nuclear factor Y, subunit C4