PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001324-PA
Common NameOsI_02617
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 386aa    MW: 40837.4 Da    PI: 9.0665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001324-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000532062601155
                       HHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++  L++l+P +            +      Ka +L + ++Y++sLq
  BGIOSGA001324-PA 206 VRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 260
                       6******************777877776664333333668889999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.347195259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-4205265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-10205276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-9205277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-7207264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIAERAARMS CLAAAGHGGG KLSRAASSQS LLAETAAAGG VHQLPASDGS SSDAPCRKRK  60
APCAKARGKD AATTIAKVLR LLSAPPLQSR RRTSPETMVN FPQSPEPGTK AKKCKLSADA  120
AGDEDTKPVA GDAGHGGNGK GKVLDAAGEP PKDYIHVRAR RGQATDSHSL AERVKAAGID  180
AANHNFFFSS ILAFADAIAA VFHLQVRREK ISERMKLLQD LVPGCNKVAK FSQKINLNFT  240
LVTGKAVMLD EIINYVQSLQ RQVEFLSMKL STVNPQLDFD VDNFIPKDAS DPIMPAPLSL  300
PPPPPPLSYS PEGASPGICY ASSQGTAMQS VVTSTKHLET APTFANHHVI PVPSLDGFHS  360
AHSQAGSCMW EDDLQSVVQM GFRGNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.795250.0leaf| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465230.0AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBankAK2889700.0AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615633.10.0transcription factor BHLH089-like isoform X2
TrEMBLA2WRY00.0A2WRY0_ORYSI; Uncharacterized protein
STRINGORUFI11G12850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-45bHLH family protein