PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001044-PA
Common NameOsI_03216
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 370aa    MW: 40363.2 Da    PI: 8.6952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001044-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM942.3e-29732461128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk................................kvka 53 
                       lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp                                 +v  
  BGIOSGA001044-PA  73 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGtrqpsghwnwstgyydyeatlvvlltcccmhaRV-- 162
                       799************.99****998885665443333333665557*********95589*******************999998664333.. PP

               NAM  54 eekew..yfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +++ +  +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  BGIOSGA001044-PA 163 GKDGLirHFFHRPSKAYTTGTRKRRKVHtdeqggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 246
                       3333345******************744456555778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3065129IPR003441NAC domain
PROSITE profilePS5100529.82373265IPR003441NAC domain
PfamPF023651.7E-1474246IPR003441NAC domain
SuperFamilySSF1019411.7E-30159265IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQVSQHVN LIKTCPSCGH RAQYEQSQLQ  60
AAAAATIQDL PGLPAGVKFD PTDQELLEHL EGKARPDARK LHPLIDEFIP TIEGENGICY  120
THPERLPGTR QPSGHWNWST GYYDYEATLV VLLTCCCMHA RVGKDGLIRH FFHRPSKAYT  180
TGTRKRRKVH TDEQGGETRW HKTGKTRPVF TGGKLKGYKK ILVLYTNYGK QRKPEKTNWV  240
MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGGGSAATAK DLSVDLVAGN NIKASNAAAE  300
HHHNDGVGGG GHGGNNSSML KEAAGIVDFY NPAAALIGYS QAAPNNRAAA SAHLTMPNFE  360
VHTGGAGFGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.98510.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329880030.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0603070.0AK060307.1 Oryza sativa Japonica Group cDNA clone:001-007-A11, full insert sequence.
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
GenBankAP0032230.0AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0037060.0AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA2WTM80.0A2WTM8_ORYSI; Uncharacterized protein
STRINGORGLA01G0213300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]