PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001024-PA
Common NameOsI_03264
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 316aa    MW: 35082.9 Da    PI: 9.97
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001024-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.64.2e-18101195371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.............................dvknkrRRiYDilNVLealnliekkekn 65 
                       +++Lr +++    + +k+e+ g++t+ne+  +  ++                             d+kn+rRR+YD++NVL a+++i+k +k+
  BGIOSGA001024-PA 101 GWGLREFSKI---VSKKVEAkGRTTYNEIMVQTSNDevytssgelivadeifaelksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKK 189
                       689*******...99999999*********9997779****************************************************.*** PP

           E2F_TDP  66 eirwkg 71 
                       ei+w+g
  BGIOSGA001024-PA 190 EIKWMG 195
                       ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.6E-851313IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-3297200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-2099195IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-14102195IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-13102196IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.82E-28200302IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-24202312IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.99E-31202305No hitNo description
PfamPF087819.7E-23203303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ  60
KKSVSLRSGG GGGGGNAAER EEGGANRNGK KEKAGAQRIT GWGLREFSKI VSKKVEAKGR  120
TTYNEIMVQT SNDEVYTSSG ELIVADEIFA ELKSITQNGL EFDEKNIRRR VYDAFNVLIA  180
IRVIAKDKKE IKWMGLTNYR YEKIQKLEEV HKELITRIKN KKKLLQEIEK QFDDLQNITL  240
RNQASQRPAE SVNGILLPFL LIKTSRKARV EIEISEDSKF ARFDFNGAPF TMHDDVSILE  300
AIRRNNKGRA GLSIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-19101196989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.163810.0panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882740.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631684.10.0transcription factor-like protein DPB isoform X1
TrEMBLA2WTS20.0A2WTS2_ORYSI; Uncharacterized protein
STRINGORGLA01G0217000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-50Transcription factor DP