PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000982-PA
Common NameOsI_03358
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 361aa    MW: 39604.8 Da    PI: 9.8015
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000982-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.6e-0768962755
               AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++r++lg+f  +++Aa+a++ a+++++g
  BGIOSGA000982-PA 68 RHQRVWLGTFAGEDDAARAYDVAAQRFRG 96
                      359*********99*************98 PP
2B398.34.6e-31184276186
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ 
  BGIOSGA000982-PA 184 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 276
                       89*******************************5556799*************************************************9653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.97312104IPR001471AP2/ERF domain
SMARTSM003801.7E-1056110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1460104IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1061104IPR016177DNA-binding domain
CDDcd000181.32E-1265104No hitNo description
Gene3DG3DSA:2.40.330.107.2E-38180278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-30182277IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-29182287No hitNo description
SMARTSM010197.1E-21184292IPR003340B3 DNA binding domain
PfamPF023627.1E-28184276IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662184295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAGRSDNGDG ALTKCVNQEE LHHDEHFSFI YKWKNKISSA GNARLYYHYG YNFGMISSKS  60
ELRKIYERHQ RVWLGTFAGE DDAARAYDVA AQRFRGRDAV TNFRPLAEAD PDAAAELRFL  120
ATRSKAEVVD MLRKHTYFDE LAQSKRTFAA STPSAATTTA SLSNGHLSSP RSPFAPAAAR  180
DHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGGE SKGVLLNFED AAGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLHAGDVV GFYRSAASAG DDGKLFIDCK LVRSTGAALA  300
SPADQPAPSP VKAVRLFGVD LLTAPAPVEQ MAGCKRARDL AATTPPQAAA FKKQCIELAL  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-491782902111B3 domain-containing transcription factor NGA1
5os9_B1e-491782902111B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.80190.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975974150.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419840.0AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence.
GenBankAP0034500.0AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA2WU110.0A2WU11_ORYSI; Uncharacterized protein
STRINGORUFI01G30390.10.0(Oryza rufipogon)
STRINGOS01T0693400-010.0(Oryza sativa)
STRINGONIVA01G31290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-85related to ABI3/VP1 2