PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000906-PA
Common NameOsI_03532
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 351aa    MW: 38763 Da    PI: 5.2877
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000906-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.21.4e-1098194186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyf 82 
                       +W++  + aL++a  ++  r +r++l++  W evs+      ++ +   s +qC+++++ l+k+y+k+ke+++  +        +s s++ yf
  BGIOSGA000906-PA  98 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYF 190
                       5**********************************9997776444455799*******************99865311111113456788888 PP

          trihelix  83 dqle 86 
                       d+++
  BGIOSGA000906-PA 191 DKMQ 194
                       8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.9E-1797196No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGVTCPQTRR TIHLAEPPLS PEPNPSSPLM DDGAAPAAAA GAEFPSPSPS SSGASPSPRS  60
KRRRTDRYAQ GFEFAPGPAP ATATATAPAP TPARGTPEWS EGSTFALLDA WGDRFVRAGR  120
RSLRADEWLE VSRLAAAAAS RPPGYYSEQQ CRNRIDTLRK KYRKEKERMR LAARRPDRPD  180
RPSPSKWIYF DKMQSLMCPP PLPLQPPVVT RRRDTQPVPR QSWGLDAAEY VLGGCENAGT  240
RDSGSGAELG EEQPNEAGAG KGEDFELLVE SIRKLGDVYE RVESSKRQHM AEVEWLRRDL  300
QRDLEVRRRE ILEKAQAEIA RLTEEDGEEG DLKEGEGDDN KRFGDDGGGE E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.658970.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567642440.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623327.10.0uncharacterized protein LOC4324693
TrEMBLA2WUI10.0A2WUI1_ORYSI; Uncharacterized protein
STRINGOGLUM01G33070.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-25Trihelix family protein