PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000892-PA | ||||||||
Common Name | OsI_03587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22531.8 Da PI: 8.2045 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.6e-22 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly + BGIOSGA000892-PA 9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFL 58 79*********************************************996 PP | |||||||
2 | K-box | 33.2 | 2.2e-12 | 72 | 170 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 y++++++++++ ++ + el+k+ + + L++++R + +d e+ ++ L+ Le++Le +++k+Rs K++ + +i +lq+ + qee BGIOSGA000892-PA 72 YEATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNIIRGRQEERYG 164 566778889*************************************************************************99999999999 PP K-box 94 Lrkkle 99 L k++ BGIOSGA000892-PA 165 LCDKIA 170 988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.777 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-27 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-14 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.186 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHFLSP 60 TVPSVREFVE RYEATTHTKV WADIRQERRA ELEKVGSMCD LLEKQLRFMT VDDGEEYTVP 120 SLEALEHNLE AAMRKVRSEK DRKIGGEICY LQNIIRGRQE ERYGLCDKIA HAQTLKDVEC 180 GSTSLSNGLD LKLGFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-14 | 1 | 90 | 1 | 95 | MEF2 CHIMERA |
6byy_B | 3e-14 | 1 | 90 | 1 | 95 | MEF2 CHIMERA |
6byy_C | 3e-14 | 1 | 90 | 1 | 95 | MEF2 CHIMERA |
6byy_D | 3e-14 | 1 | 90 | 1 | 95 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.28015 | 0.0 | panicle |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY177699 | 0.0 | AY177699.1 Oryza sativa (japonica cultivar-group) transcription factor MADS32 mRNA, complete cds. | |||
GenBank | HQ711850 | 0.0 | HQ711850.1 Oryza sativa Indica Group chimeric floral organs 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642650.1 | 1e-144 | MADS-box transcription factor 32 isoform X1 | ||||
Swissprot | Q8S151 | 1e-145 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A0D3ETJ8 | 1e-142 | A0A0D3ETJ8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YEF2 | 1e-142 | A0A0D9YEF2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FSJ1 | 1e-142 | A0A0E0FSJ1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WUN4 | 1e-142 | A2WUN4_ORYSI; Chimeric floral organs 1 | ||||
TrEMBL | I1NRD9 | 1e-142 | I1NRD9_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G33550.1 | 1e-143 | (Oryza glumipatula) | ||||
STRING | OS01T0726400-00 | 1e-143 | (Oryza sativa) | ||||
STRING | ONIVA01G33710.1 | 1e-143 | (Oryza nivara) | ||||
STRING | ORGLA01G0242900.1 | 1e-143 | (Oryza glaberrima) | ||||
STRING | OBART01G29490.1 | 1e-143 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-23 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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