PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000736-PA | ||||||||
Common Name | OsI_03908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 25649.9 Da PI: 7.886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.2 | 3.1e-34 | 38 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+v BGIOSGA000736-PA 38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSV 130 7*********************************998555559************************************************** PP DUF260 78 gvilklqqqleqlkaelallkee 100 g+il+lq+q++ l+ +l++l+++ BGIOSGA000736-PA 131 GTILALQHQVSLLQGQLSVLESQ 153 *****************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.628 | 37 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-38 | 38 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SSAGPGAPCG ACKFLRRRCV PGCVFAPHFS 60 GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRRDA ARTVCYEAQA 120 RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH 180 SAASTPNQVV VNYDDPPHAV DLMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV 240 GQRQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 31 | 155 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 31 | 155 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.91172 | 0.0 | flower| panicle |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242468 | 0.0 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630092.1 | 1e-172 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 3e-46 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A2WVI9 | 1e-174 | A2WVI9_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA07G0240800.1 | 1e-172 | (Oryza glaberrima) | ||||
STRING | OBART01G32570.1 | 1e-172 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-23 | LOB domain-containing protein 20 |