PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000684-PA
Common NameOsI_04015
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 485aa    MW: 50642.8 Da    PI: 9.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000684-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05244266223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ Cg+ Fs ++ L+ H  + H
  BGIOSGA000684-PA 244 SCHRCGEQFSKWEALEAHHLSkH 266
                       7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704243271IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-24268484No hitNo description
Gene3DG3DSA:3.90.228.103.2E-12292461IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA APAGGGVLAS PHEADGDGAV VSSFVGTLRP  180
GTPGPGWSHG LQYSGSCRGS MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG  240
GGLSCHRCGE QFSKWEALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE  300
RVFKVHNTQR TLARFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG  360
SSSLCASDKC AVCRIIRHGF SAKKEGKAGV GVFTTSTSGR AYESIEASAG AVVGGDDPAA  420
TRKALLVCRV IAGRVHKPLE NLKEFAGQTG FDSLAGKVGP YSNIEELYLL NPRALLPCFV  480
VICKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.379210.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329810370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLB8AAG70.0B8AAG7_ORYSI; Uncharacterized protein
STRINGOS01T0785900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-141C2H2 family protein