PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000613-PA
Common NameOsI_04179
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 443aa    MW: 47648.8 Da    PI: 10.1839
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000613-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.51.6e-14273315547
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                       +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN +Lk 
  BGIOSGA000613-PA 273 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKR 315
                       79*************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-14268316No hitNo description
SMARTSM003381.1E-10269337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.392271316IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11273316No hitNo description
PfamPF001705.8E-12273315IPR004827Basic-leucine zipper domain
CDDcd147071.15E-24273325No hitNo description
PROSITE patternPS000360276291IPR004827Basic-leucine zipper domain
Gene3DG3DSA:3.30.428.101.9E-26325435IPR011146HIT-like domain
SuperFamilySSF541975.72E-18327435IPR011146HIT-like domain
PfamPF012304.8E-11364435IPR001310Histidine triad (HIT) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MASKAGGGGV ARRGGGRMRS LGRQGSMYSL TLDEVQSQLG EPLHSMNLDE LLRSVFPDGL  60
AIADGAGAGA GATTSSQQHQ PGSGLLRQGS ITMPPELSKK TVDEVWKGIQ AAPKRNAETG  120
GGGGGGGGGG RRRRERQPTL GEVTLEDFLV KAGVVTQGSL KELSDVGNVD PVGRGVTATG  180
TVDLAPGSHW IEQYKQQIAS TDAHHHGQQG VQGAYFPNRL VPQPLNVGPG AILEPSYSDG  240
QTSSGMIGGM SDSQTPGRKR GMSGDVADKL MERRQKRMIK NRESAARSRA RKQAYTNELE  300
NKVSRLEEEN VRLKRQKVVH QVTIKRSSSC FDKILRKEIP SQVVYEDEKF AFQNRGLKGG  360
AVQTLAFRDI SPQAPVHIII IPKVKDGLSR LSKAEERHVE VMGHLLYAAK TIAKQENLDD  420
GFRIVINDGP NGCQSDITSI FIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5km5_A7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
5km5_B7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
5km8_A7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
5km8_B7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
5km9_A7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
5km9_B7e-2332743531123Histidine triad nucleotide-binding protein 2, mitochondrial
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129136GRRRRERQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.422000.0panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627754.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB8AB920.0B8AB92_ORYSI; Uncharacterized protein
STRINGOMERI01G31540.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27073883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.17e-59ABA-responsive element binding protein 3