PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000452-PA | ||||||||
Common Name | OsI_04507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 41040.1 Da PI: 6.4025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.7e-06 | 214 | 233 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ BGIOSGA000452-PA 214 FICHVCNKTFNRYNNMQMHM 233 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-5 | 210 | 237 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 214 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 214 | 233 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 216 | 236 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.75E-5 | 282 | 318 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGLRTCSAME GEVVAASPFF EWLKPPPRPA SSSSWSSSFS SSSSMASRDQ ETVVPGEDGG 60 GEIQEDHKSG MTCLPLLSML EEGNSKRHEH PVKEEIMSSA HAAGVVEPGV ELNIGLPVTG 120 SSAQEVTMEE DDEEEDDDDV GEEEMDEWKP MHGGCKVEGD EEQYGEAVAS VEGSSSITAV 180 GDMFGGVGAE SGVAMSSRYW IPTPAQILVG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY 240 RKGPESLKGT QTLAMLKLPC YCCAAGCKNN VAHPRARPLK DFRTLQTHYK RKHGAKPFRC 300 RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHL PVAESAAAAA 360 TTPADKDRII SFQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.36152 | 0.0 | callus| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32974352 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064334 | 0.0 | AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625834.1 | 0.0 | protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A0D3EWI2 | 0.0 | A0A0D3EWI2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H6J1 | 0.0 | A0A0E0H6J1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N595 | 0.0 | A0A0E0N595_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8ACI2 | 0.0 | B8ACI2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q5N7D6 | 0.0 | Q5N7D6_ORYSJ; Putative zinc finger protein | ||||
STRING | ORUFI01G41290.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G25710.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART01G37960.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 2e-92 | WIP domain protein 4 |