PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA000451-PA

Common Name

OsI_04511

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 538aa MW: 59472.6 Da PI: 6.9383

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA000451-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.8e-11	227	257	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ BGIOSGA000451-PA 227 AKTERRLAQNREAARKSRLRKKAYVQNLETS 257 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	224	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	226	270	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	227	258	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.41E-20	228	280	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	228	272	No hit	No description
SuperFamily	SSF57959	7.03E-7	228	271	No hit	No description
PROSITE pattern	PS00036	0	231	246	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-29	309	383	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF 60 GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF PSWPMRQQQQ 120 LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQPGQEV MMVTTDDYSY 180 KPGLAAASPS FQQQHQLQHQ QQQQLHGGDH DKRKHGSTRK DGKSVDAKTE RRLAQNREAA 240 RKSRLRKKAY VQNLETSRVR LQQIEQELQR ARSQGLFLGG CRAAGDMSSG AAMFDMEYAR 300 WLDDDSKRLT DLRGGLQAHL LDTNLGLIVE ECMQHYDELF QLKAALARSD VFHLLTGTWA 360 TPAERCFLWM GGFRPSDLLK ILIQQLDPLT EQQMLGIYSL QQSSEQAEEA LAQGLQQLHQ 420 SLADTVAAGT LNDGPGVPNY MSLMAIALDK LASLESFYQQ ADNLRQQTLH QLRRILTTRQ 480 AARCFLSIGE YYRRLRALSN LWSSRPRENF IGTESVSPTG TELQPMHNQP QQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF  60
GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF PSWPMRQQQQ  120
LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQPGQEV MMVTTDDYSY  180
KPGLAAASPS FQQQHQLQHQ QQQQLHGGDH DKRKHGSTRK DGKSVDAKTE RRLAQNREAA  240
RKSRLRKKAY VQNLETSRVR LQQIEQELQR ARSQGLFLGG CRAAGDMSSG AAMFDMEYAR  300
WLDDDSKRLT DLRGGLQAHL LDTNLGLIVE ECMQHYDELF QLKAALARSD VFHLLTGTWA  360
TPAERCFLWM GGFRPSDLLK ILIQQLDPLT EQQMLGIYSL QQSSEQAEEA LAQGLQQLHQ  420
SLADTVAAGT LNDGPGVPNY MSLMAIALDK LASLESFYQQ ADNLRQQTLH QLRRILTTRQ  480
AARCFLSIGE YYRRLRALSN LWSSRPRENF IGTESVSPTG TELQPMHNQP QQNQYSGF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.42388	0.0	callus\| flower\| leaf\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32986547	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	B8ACI5	0.0	B8ACI5_ORYSI; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-132	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]