PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000383-PA
Common NameOsI_04673
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 349aa    MW: 38427.2 Da    PI: 4.2518
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000383-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.83.4e-751233492230
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal+++e +   +  +l+a+++++e++P+++f+
  BGIOSGA000383-PA 123 KQLLFDCATALSDYNVDEAQAIITDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALSCKEPP---TLYQLSAMQILFEICPCFRFG 212
                       589*****************************************************************9...89999**************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aIlea +ge+rvHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+k+Ae +g++fef++ v  +
  BGIOSGA000383-PA 213 FMAANYAILEACKGEDRVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGAN 304
                       *********************************************************99778889***********************.799* PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                       + d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++
  BGIOSGA000383-PA 305 IGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRM 349
                       ******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.31196349IPR005202Transcription factor GRAS
PfamPF035141.2E-72123349IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPYMVTADGH SPSSADNSCS DVAKDSPLVS NVSQQNSQSI SDNQSSELEV EFDEDDIRMK  60
LQELEHALLD DSDDILYEIS QAGSINDEWA DPMKNVILPN SPKESESSIS CAGSNNGEPR  120
TPKQLLFDCA TALSDYNVDE AQAIITDLRQ MVSIQGDPSQ RIAAYLVEGL AARIVASGKG  180
IYKALSCKEP PTLYQLSAMQ ILFEICPCFR FGFMAANYAI LEACKGEDRV HIIDFDINQG  240
SQYITLIQFL KNNANKPRHL RITGVDDPET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA  300
VGANIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-3312932526219Protein SCARECROW
5b3h_A8e-3312932525218Protein SCARECROW
5b3h_D8e-3312932525218Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.99020.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329774750.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610828.10.0scarecrow-like protein 1
SwissprotQ9SDQ31e-122SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA2WXM20.0A2WXM2_ORYSI; Uncharacterized protein
STRINGORUFI01G42800.10.0(Oryza rufipogon)
STRINGONIVA01G44280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-123SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]