PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000185-PA
Common NameOsI_05068
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 473aa    MW: 50997.1 Da    PI: 7.673
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000185-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.5e-28677178
            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78
                      +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa      +++lp +++ da+sslvyeA+ r+rdPvyG+vg
  BGIOSGA000185-PA  6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGA------INELPAQQQGDAVSSLVYEANDRIRDPVYGCVG 77
                      7*************************************8......6799***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1145100IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-27677IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010090Biological Processtrichome morphogenesis
GO:0030307Biological Processpositive regulation of cell growth
GO:0042023Biological ProcessDNA endoreduplication
GO:0048364Biological Processroot development
GO:0048367Biological Processshoot system development
GO:0051276Biological Processchromosome organization
GO:0005634Cellular Componentnucleus
GO:0009330Cellular ComponentDNA topoisomerase complex (ATP-hydrolyzing)
GO:0003690Molecular Functiondouble-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINELPA QQQGDAVSSL  60
VYEANDRIRD PVYGCVGPGP SPSCRTRTTQ RKILGYATGC HLPSLPVPRS VGPCSGFPSI  120
VGSEGVLREG GAGMGEEEDP DWLRAFQPPT TSTVMLSSDS YDSPENSPTR TTPSGEEQKG  180
ENKASSDHVG DGDVASPNKG KKATPTRRKT PTSQEDAFGK DEKPTMESNQ DKPAKRSTPK  240
KLVKFPSSSN ASKVTGPKAG PDQIDDTLEH REEGVAEVDM QDKLTEHSVS QRLPLIIPDK  300
VQRSKALIEC DGDSIDLSGD VGAVGRIVIS NSPNGNQDLL LDLKGTIYKS TIVPSRTFCV  360
VSVGQTEAKI ESIMNDFIQL EPQSNLFEAE TMVEGTLDGF TFDSDEEGDK LPEPHASQND  420
QNNEDGDQPK AKTKRKAEKP AGKGQKKAKV AGKATKKVTR KTQTTKRTKK AKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28277788LOB family transfactor Ramosa2.1
5ly0_B4e-28277788LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.886020.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975985860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0593400.0AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625935.10.0DNA-binding protein BIN4
TrEMBLB8A8S70.0B8A8S7_ORYSI; Uncharacterized protein
STRINGONIVA08G12870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP638944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-38LBD family protein