PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI12G20260.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 728aa MW: 78373.6 Da PI: 6.4487

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI12G20260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.7	7.5e-16	455	494	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C N + ORUFI12G20260.1 455 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPS 494 689**********************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	6.5E-16	454	495	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.237	455	547	IPR005172	CRC domain
Pfam	PF03638	4.2E-12	457	492	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MDTPDRPPRA AATAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS 60 PHVNPAKESK LPIREDSVQL SRESHSPNSV RTRTGATSSI IRMIRCKNIV SENCSITCYL 120 NDSTSSKASQ PIQLCGGSAE SDTNQNTDGK KDPTTEQDRT DIEFVLLDQC GPEKMDSSQS 180 GNNACENQLS EQHKDELGSF DGGYMFAHQP HSDMLRLAPP FESETQLVNE TLQTDNVYCE 240 TLLTDGPSGS YTQNSAPDPH LYWAGAVEGC ATDYTPQMLP GACQSQLVPN DQINNKLNEP 300 SDYMPMDHNV SSQNLRGMRR RCLFNEKSGA ANEGAKNSSA RHSTNSTTPR RKISSSDNNL 360 KTLRTPPCAL PGIGLHLNAL ATVPKDKMVP HNDIQSSLNQ ASNVPSAVGS SPPTDDPHTI 420 NDDSSQTAVV AYVGESSQGS PKKKRHKFDN GDGTSCKRCS CKKSKCLKLY CECFHAGVFC 480 SEPCSCQGCL NMPSNMETVL STREQIESRN PLAFAPKVIR TEPGQELAGG VGCSVSCRCE 540 GCKNAFGRRE GVALLGIEEA KRGCEEKDGG VKEETTDNDK QLVIYQDSIN LTPAESVLAT 600 PSVVDYRPLV ALPPLSSKKP RSSTKLGGYS SRLEGHLKSD ILLSPFESYA EMMLGDGTSN 660 VLKGESSPQT SVKVVSPNKK RVSPPRIGTG LSPICKSGRK LILKSIPSFP SLGVDITNED 720 PNTSSLAP

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MDTPDRPPRA AATAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS  60
PHVNPAKESK LPIREDSVQL SRESHSPNSV RTRTGATSSI IRMIRCKNIV SENCSITCYL  120
NDSTSSKASQ PIQLCGGSAE SDTNQNTDGK KDPTTEQDRT DIEFVLLDQC GPEKMDSSQS  180
GNNACENQLS EQHKDELGSF DGGYMFAHQP HSDMLRLAPP FESETQLVNE TLQTDNVYCE  240
TLLTDGPSGS YTQNSAPDPH LYWAGAVEGC ATDYTPQMLP GACQSQLVPN DQINNKLNEP  300
SDYMPMDHNV SSQNLRGMRR RCLFNEKSGA ANEGAKNSSA RHSTNSTTPR RKISSSDNNL  360
KTLRTPPCAL PGIGLHLNAL ATVPKDKMVP HNDIQSSLNQ ASNVPSAVGS SPPTDDPHTI  420
NDDSSQTAVV AYVGESSQGS PKKKRHKFDN GDGTSCKRCS CKKSKCLKLY CECFHAGVFC  480
SEPCSCQGCL NMPSNMETVL STREQIESRN PLAFAPKVIR TEPGQELAGG VGCSVSCRCE  540
GCKNAFGRRE GVALLGIEEA KRGCEEKDGG VKEETTDNDK QLVIYQDSIN LTPAESVLAT  600
PSVVDYRPLV ALPPLSSKKP RSSTKLGGYS SRLEGHLKSD ILLSPFESYA EMMLGDGTSN  660
VLKGESSPQT SVKVVSPNKK RVSPPRIGTG LSPICKSGRK LILKSIPSFP SLGVDITNED  720
PNTSSLAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0RJR0	0.0	A0A0E0RJR0_ORYRU; Uncharacterized protein
STRING	ORUFI12G20260.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-46	Tesmin/TSO1-like CXC domain-containing protein