PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G20130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 322aa    MW: 34119.9 Da    PI: 4.4248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G20130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15156206255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GV+++   grW AeIrd    + ++  rf++g+f+ta +Aa a++a  ++l+g
  ORUFI12G20130.1 156 GFLGVHQRT-YGRWSAEIRD----NvIKgSRFWIGTFDTALDAALAYDAVSRRLYG 206
                      788***999.8*********....66345********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.004156214IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17156215IPR016177DNA-binding domain
SMARTSM003801.3E-18156220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-22157215IPR001471AP2/ERF domain
PRINTSPR003673.6E-5157168IPR001471AP2/ERF domain
PfamPF008475.1E-8159206IPR001471AP2/ERF domain
PRINTSPR003673.6E-5180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCGGGPDNHH AITVAADLPP PPPSVVAVEM APPRGHRPGK EVEYNEEEDD DDEYDGREFE  60
EEFLRFSMMV DEEDDDGDDD DEVEVEIIAV VSPPHRPLVG ARGTTSAVES VTNLQARTSP  120
LPNPVVPQTG TKASKRGDSG AKAKPAAAKK RRSKHGFLGV HQRTYGRWSA EIRDNVIKGS  180
RFWIGTFDTA LDAALAYDAV SRRLYGLNAK TNFPAAAGED DLPPPPPPAK PCSSTKRPKK  240
CNTSGDLGAA AAPPQAVDTP AAAAAGVELT SLLCSVAAQA QEVSDGWEFI QELLLLGGGV  300
SPLDYLNGQE LAGAAVGDLW SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-12152214263ATERF1
3gcc_A1e-12152214263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153KKRRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875440.0AK287544.1 Oryza sativa Japonica Group cDNA, clone: J065016L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619473.11e-176ethylene-responsive transcription factor ERF023
TrEMBLA0A0E0RJP60.0A0A0E0RJP6_ORYRU; Uncharacterized protein
STRINGORUFI12G20130.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-10ERF family protein