PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G20110.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 197aa    MW: 20878.2 Da    PI: 4.6196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G20110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.5e-142569251
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                     +++GVr+++  grW+AeIrd      +  +  ++g+f+ta eAa a++a ++
  ORUFI12G20110.1 25 RFRGVRQRP-YGRWAAEIRD------TvvQGTRIGTFDTAVEAALAYDATAR 69
                     69*******.7*********......44599******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-252587IPR001471AP2/ERF domain
PROSITE profilePS5103217.532581IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-162582IPR016177DNA-binding domain
PfamPF008473.3E-72569IPR001471AP2/ERF domain
CDDcd000188.46E-212583No hitNo description
Gene3DG3DSA:3.30.730.102.9E-222582IPR001471AP2/ERF domain
PRINTSPR003675.2E-92637IPR001471AP2/ERF domain
PRINTSPR003675.2E-96383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNKDDEVVTK KGNKAGRRRP ASRHRFRGVR QRPYGRWAAE IRDTVVQGTR IGTFDTAVEA  60
ALAYDATARW LYGSKAVTNF PTTTGDGDDG LPVAEPAVVV VAAPAFAGEE MDKQVAPAAA  120
TAAETVAADP GAGELGPVVL CHELEATNGW QYEAYGYGYS MGLELLENYA YAGDVQPLGL  180
GGSTSNAAAA NDCLWMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-152688670ATERF1
3gcc_A6e-152688670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8375280.0AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0RJP41e-141A0A0E0RJP4_ORYRU; Uncharacterized protein
STRINGORUFI12G20110.11e-142(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-18ethylene responsive element binding factor 5