PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19910.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 287aa    MW: 30256.7 Da    PI: 10.2433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-14118164455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  ORUFI12G19910.1 118 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 164
                      8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17118171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16118176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11118164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-11120168No hitNo description
SMARTSM003532.7E-13120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTTTTTLLP EQPLVDDHHL PAAAAAPPSE EEMAAWLYPI VSGHEVAGGG WRSPEAQDDR  60
RAAPAPEKKQ MEKMPAAASP TTTMNKDETS DDSGERKKKK ASSAAGKASK HHHAAAGAHN  120
LTEKRRRFKI TERFRTLQRL VPGCDKSNQA STLDQTIQYM KSLQHQLKAM SVVGSPPALL  180
YPAAVHPQSY MHPPPPPPPV TMPMHPGMVL AAPPPGAAPP PGPPAMVPFG AMLPYPPYPA  240
VLLPPPAAAT LYGRPPAPAP GVAARRHGSS GGGRISKSSS SSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7325350.0AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.14e-91transcription factor APG
TrEMBLA0A0E0RJL80.0A0A0E0RJL8_ORYRU; Uncharacterized protein
STRINGORUFI12G19910.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-15phytochrome interacting factor 3