PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19880.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 33525.4 Da    PI: 10.2825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14144191455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +    + K + a++L ++++Y+ksLq
  ORUFI12G19880.1 144 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 191
                      8*************************9....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-17139199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-14144195No hitNo description
Gene3DG3DSA:4.10.280.101.5E-17144197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-13146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRQGGGGACS FNQPPPLLPP AGIIVPGTTT TTLLPEQPVV DDHLPAAAAA PPSEEEMAAW  60
LYPIVGGHQV AAGGWLSPEA GDDRRAAPPA PEKKQMDNMP AVASPTTTMN KDEASDDSGE  120
RKKKKKKASS AAGKASRHRH AAGAHNLTEK RRRFKITERF RTLQRLVPGC DNKSNQASTL  180
DQTIQYMKSL QHQLEATSAV GSPAAAVLYP AAVHPQSYMH PPAPPPPVAG AAAPVTMAPM  240
PAGMVLAAAP PGAAPPPGPP ATMMPFGAML PYPPYPAVLL PPPPATLYGR PPAAAPSVAA  300
RRHGSTSGGG RISKSSSSSL RKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125ERKKKKK
2120126RKKKKKK
3148153EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.11e-148transcription factor APG
TrEMBLB8BMU70.0B8BMU7_ORYSI; Uncharacterized protein
STRINGORUFI12G19880.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-12phytochrome interacting factor 3-like 5