PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19840.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 226aa    MW: 24599.7 Da    PI: 4.3065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-121081481155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  ORUFI12G19840.1 108 KRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 148
                      8******************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.33897147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-6105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-11108152No hitNo description
PfamPF000102.4E-9108148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13110155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEMTSCYNDV DAGDMFAAAD YYSAGDGGDL FDMVWPGRRR RREEDNTSGC LPLSPPPPPE  60
LAVDDQLLAG GDGGGGEPVA VAVAEDDDSG ERWTEDQVPT DEGICVMKRR CKINENLKTL  120
QQLVPGCDKS NNQASTLDKT IRYMKSLQQH VQAMSVGCIM KPAAAGVSYH PFLQPPPPEA  180
VTCWSSWRRS PQDPGMPLLD LPPPPLPLST TTTMTCSLTS SFCWCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317431e-124AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-124AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-124CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.13e-21putative transcription factor bHLH056
TrEMBLA0A0E0RJL11e-166A0A0E0RJL1_ORYRU; Uncharacterized protein
STRINGORUFI12G19840.11e-166(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-13phytochrome interacting factor 3-like 5