PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19830.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 24083.1 Da    PI: 6.9423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08156182430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h   E+rRR+riN++f  L++l+P +
  ORUFI12G19830.1 156 THGLTEKRRRSRINEKFKMLQRLVPGC 182
                      78999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.24E-7138188No hitNo description
SuperFamilySSF474591.7E-8150185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.619152223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9155184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6156182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATTAAAA AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG  60
EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG SGGDDVAAGG DHQDPAVKKP  120
DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP  180
GCDKAHSLIP TFTAGGPPAA SQGDLHRHRR LMVVVSVHHR CRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.11e-149transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0RJL01e-163A0A0E0RJL0_ORYRU; Uncharacterized protein
STRINGORUFI12G19830.11e-164(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-08phytochrome interacting factor 3-like 5