PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19230.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 391aa    MW: 40699.8 Da    PI: 5.4387
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.1e-32243298156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  ORUFI12G19230.1 243 KARRCWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 298
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.583240300IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-29241301IPR009057Homeodomain-like
SuperFamilySSF466894.03E-17241301IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26243298IPR006447Myb domain, plants
PfamPF002493.2E-7245296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGSSSASAAQ HEEAAAAAAF VLGGVDMRML AARTATGALA RAGGGEAAAA AAAARFEDCI  60
RSLEAEKAKM EVFRRELPIS VHLIADVIEW LKDEVDSGGG AATGDVRAAG DGEEEVGGVG  120
GGGGGEGGGG RERQAELDEL GAAVELREPH KHQHQQWRQR QEAAAQVLSI SNHDQVSNAF  180
MPLATLPAFA KSLEKADAAV PDLSLSSRVA MADAPACPAA PSATSSAVTD VAVAQRQQAV  240
QRKARRCWSP ELHRRFVAAL QRLGGPQAAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR  300
RASDGGDGGG DHQTVGGRLW PLPPEQYTTS QHSTSQSGSP QGPLQLTVSS SHAVSVTAGD  360
SCDGGEEEEE DGKSGSYSWE MQNGARASSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448801e-169AL844880.3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-169AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.11e-124transcription factor HHO6
TrEMBLA0A0E0RJD20.0A0A0E0RJD2_ORYRU; Uncharacterized protein
STRINGORUFI12G19230.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-29G2-like family protein