PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G18660.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 802aa MW: 88468.4 Da PI: 6.9749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+Fs++ +L+ H+++H ORUFI12G18660.2 71 QCQMCSKVFSTSGSLREHMMMH 92 7*******************99 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.4e-05 | 275 | 297 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF + L H+r+H ORUFI12G18660.2 275 HRCNTCGKSFGSGQALGGHMRRH 297 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.058 | 10 | 39 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-9 | 10 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.57 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.57 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.3E-4 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.4E-7 | 71 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.28E-9 | 71 | 92 | No hit | No description |
Pfam | PF13912 | 0.07 | 71 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.28E-9 | 270 | 297 | No hit | No description |
PROSITE profile | PS50157 | 10.907 | 275 | 302 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 275 | 297 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.5E-11 | 275 | 298 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0079 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD 60 DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD 120 VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR 180 SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH 240 ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR 300 KCNRQRGVAD HAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS 360 NLHRPIMTRV LILRLTTNPL FFPDASLSPL LSPLPQPKPP QLAAALARPR RMNLGREMAS 420 DVPQDDVQCH FCGTYLRPRS FRKHQQRCKY NPDALTRQNL SASSIPTSAT RATHSEMASD 480 VPQGYVQCHF CDTYLRPRSL RKHQQRCMYN PDALTRQNLS ASSIPTSARR ATHSEMASDG 540 PQENCQCSFC HKDFEGRSSC AEHELQCKNN PDVHSQTEPS GNAQGGIGSL DVHVPRRKRT 600 ARNQPLPEQH LKKPASDYAQ GGTSDAPETP PKPTTSEVKV DSAVNAPDIT IPDNKDPSVM 660 QKQKKKLDLN LQPHSDSSDQ EEQADNFSSI NDLSTIDTNS DKKKNTITGV ADTNIPDHKD 720 PSRMQMQIKL DLNLPPHDDS SSSMDDLKTL APTDTNSDKE TNTGNGGVDT NIPDHSDPSA 780 MQTKNKLDFN LPPRNDSSDS LV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109747 | 0.0 | AK109747.1 Oryza sativa Japonica Group cDNA clone:002-146-F04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0RJ61 | 0.0 | A0A0E0RJ61_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G18660.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9112 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-07 | C2H2 family protein |