PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G18660.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 769aa    MW: 84999.4 Da    PI: 7.1141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G18660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-063859223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+k+Fs++ +L+ H+++H
  ORUFI12G18660.1 38 QCQMCSKVFSTSGSLREHMMMH 59
                     7*******************99 PP
2zf-C2H215.26.1e-05242264123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF +   L  H+r+H
  ORUFI12G18660.1 242 HRCNTCGKSFGSGQALGGHMRRH 264
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.84E-71059No hitNo description
PROSITE profilePS501579.2861037IPR007087Zinc finger, C2H2
PfamPF139121.9E-91034IPR007087Zinc finger, C2H2
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
SMARTSM003553.3E-43759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.573764IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-73863IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0673856IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SuperFamilySSF576676.68E-6239268No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4242264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0079242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907242269IPR007087Zinc finger, C2H2
PfamPF139128.1E-11242265IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVETQCQ MCSKVFSTSG SLREHMMMHG  60
GEKVVVKAEE EAAGLIEALG IADSMQDVMV FSSVKRKRSF RSKRQTPALS LEEIEAADAL  120
LLLSGCFDKT SAYEDCYLGD IEDSSLRSIV LTEVNMNAVD RCSVRSVGSK EPINDNNSGY  180
KDCYGQSDKE NCLIVPKEEM DPNDFDHELV RDAALRKPRT DNSDEEMKFG DLPAAAMKDN  240
SHRCNTCGKS FGSGQALGGH MRRHYVRKCN RQRGVADHAG SVLMKVQKLK LRLDPILFDV  300
TLPALTDGDC CISVGVKPEP QLWCVTSNLH RPIMTRVLIL RLTTNPLFFP DASLSPLLSP  360
LPQPKPPQLA AALARPRRMN LGREMASDVP QDDVQCHFCG TYLRPRSFRK HQQRCKYNPD  420
ALTRQNLSAS SIPTSATRAT HSEMASDVPQ GYVQCHFCDT YLRPRSLRKH QQRCMYNPDA  480
LTRQNLSASS IPTSARRATH SEMASDGPQE NCQCSFCHKD FEGRSSCAEH ELQCKNNPDV  540
HSQTEPSGNA QGGIGSLDVH VPRRKRTARN QPLPEQHLKK PASDYAQGGT SDAPETPPKP  600
TTSEVKVDSA VNAPDITIPD NKDPSVMQKQ KKKLDLNLQP HSDSSDQEEQ ADNFSSINDL  660
STIDTNSDKK KNTITGVADT NIPDHKDPSR MQMQIKLDLN LPPHDDSSSS MDDLKTLAPT  720
DTNSDKETNT GNGGVDTNIP DHSDPSAMQT KNKLDFNLPP RNDSSDSLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097470.0AK109747.1 Oryza sativa Japonica Group cDNA clone:002-146-F04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619352.10.0uncharacterized protein LOC4352629
RefseqXP_015619353.10.0uncharacterized protein LOC4352629
TrEMBLA0A0E0RJ600.0A0A0E0RJ60_ORYRU; Uncharacterized protein
STRINGORUFI12G18660.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-07C2H2 family protein