PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI12G18650.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 360aa MW: 39303 Da PI: 4.1797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI12G18650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	8	29	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ +L +H t+ ORUFI12G18650.1 8 PCQFCGKNFKRRGDLLNHELTC 29 6*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.787	7	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MASEWDSPCQ FCGKNFKRRG DLLNHELTCK YISDVHPQTE SSGDAQARKD ILGFHIPRQK 60 RTVPAFPASD YAQGGINGAT SEVKVDWDPE EETDVLEALL LLREQPAYPG EETFSDDEPG 120 AGNVDDEPAA SNNPDQVLKM CSDKGSSPVE CYGGDERRVG ACAIAGVEED DLSPNVGCRG 180 VTDCVDESDV IQKQKRKPDL SVADLRDLVE MKQQNMKADT NIHDQGHPSV MQMQKNELSL 240 DLLPHKNSSD HEVPTLSVSS MDDPDGLVST DTNSDKETET VNVGIDINIP EQRESSVTRM 300 QNEKLGLNLL PRNDSSGHEV PILSVSSTDD LNSLIPTDTS SDKDTNSNVA DRLGHCPAQE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MASEWDSPCQ FCGKNFKRRG DLLNHELTCK YISDVHPQTE SSGDAQARKD ILGFHIPRQK  60
RTVPAFPASD YAQGGINGAT SEVKVDWDPE EETDVLEALL LLREQPAYPG EETFSDDEPG  120
AGNVDDEPAA SNNPDQVLKM CSDKGSSPVE CYGGDERRVG ACAIAGVEED DLSPNVGCRG  180
VTDCVDESDV IQKQKRKPDL SVADLRDLVE MKQQNMKADT NIHDQGHPSV MQMQKNELSL  240
DLLPHKNSSD HEVPTLSVSS MDDPDGLVST DTNSDKETET VNVGIDINIP EQRESSVTRM  300
QNEKLGLNLL PRNDSSGHEV PILSVSSTDD LNSLIPTDTS SDKDTNSNVA DRLGHCPAQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070634	0.0	AK070634.1 Oryza sativa Japonica Group cDNA clone:J023055E06, full insert sequence.
GenBank	AL928774	0.0	AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0E0RJ59	0.0	A0A0E0RJ59_ORYRU; Uncharacterized protein
TrEMBL	Q2QN54	0.0	Q2QN54_ORYSJ; Os12g0578600 protein
STRING	ORUFI12G18650.1	0.0	(Oryza rufipogon)
STRING	OS12T0578600-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11