PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G17730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 300aa    MW: 33864.5 Da    PI: 5.3717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G17730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1759106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT +Ed+ lv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  ORUFI12G17730.1  59 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 106
                      89********************************************97 PP

2Myb_DNA-binding55.61.2e-17112155146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  ORUFI12G17730.1 112 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 155
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.44854106IPR017930Myb domain
SuperFamilySSF466892.55E-3057153IPR009057Homeodomain-like
SMARTSM007171.3E-1458108IPR001005SANT/Myb domain
PfamPF002498.8E-1659106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2260113IPR009057Homeodomain-like
CDDcd001676.67E-1161106No hitNo description
PROSITE profilePS5129423.86107161IPR017930Myb domain
SMARTSM007171.2E-15111159IPR001005SANT/Myb domain
PfamPF002494.4E-16112155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-24114160IPR009057Homeodomain-like
CDDcd001671.09E-11114155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAASQRSRST AAQLDVDDQA AADQLMTMMR RPAAVLQDEA AAEEEASAAA ADLQLELRRG  60
PWTVDEDLTL VNYIADHGEG RWNSLARAAG LKRTGKSCRL RWLNYLRPDV KRGNFTADEQ  120
LLILDLHSRW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKH AKQLNCDANS ARFKDAMRYL  180
WMPRLADASQ LGDHHGYNST TAMGDAHGMP VMTSSSSDSF ATSESYDGGL YANVQDNEMV  240
NGGDYWMQGA NKGFCSNYES EQLHPHEHSQ FQDPDLVGWV QGFSEGISEN FWSLEDIWKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-265315321120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4061840.0CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618854.10.0transcription factor JAMYB-like
SwissprotQ2QZJ81e-108JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A0E0RIT40.0A0A0E0RIT4_ORYRU; Uncharacterized protein
TrEMBLQ2QNI60.0Q2QNI6_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGORUFI12G17730.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-75myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]