PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G15060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 624aa MW: 65338.7 Da PI: 6.5687 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 218 | 239 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg ORUFI12G15060.1 218 PCPEFKKGAGCRRGDMCEYAHG 239 8******88************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.5E-9 | 50 | 135 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-8 | 50 | 127 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.488 | 52 | 123 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.446 | 88 | 123 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 0.019 | 91 | 122 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.8E-4 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 216 | 240 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 218 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 87 | 249 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.841 | 249 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MGEPGGAEAA VSARLLELAA DDNAAGLGEL LAAWPSLADE PAPWYTPARG AEPLTPLMVA 60 AVYGSVGCLD ALLSPPYLVD PNRASASSLS TPLHLAAAGG SASAPAAVSR LLAAGADPAL 120 LDHLQRRASD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK 180 VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV 240 FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPDELRPLYL RPLYVSTGSA VPSPRGALEM 300 AAAAAAMGMG LSSPGSSSFT PPLSPSAGGG GGGGGGGGGG GAWPQQPSVP ALCLPGSAGN 360 LHLSRLRTSL SARDMAVDEL LAAAAAAADY DGLVASPASI RSARGKALVP SNLDELFSAE 420 LAAAAASRSP RYADQGGAAF SPTRKATVLN QFQLQQQHSL LSPRAAAVTP EPVSPMSSRL 480 LAALAQREKM QQQTLRSMSS RDLGNAASLL VGSPVSSSMS KWGFPSGNPD WGADDEELGR 540 LKRCSSFELR SGAANGNHEP DLSWVNTLVK EPTPEKMMTT TSAMDSIGIL GQNTSRDHIV 600 GGEDDTAGVI SSWLEQLQLD EMVV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL713900 | 0.0 | AL713900.4 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620786.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
Swissprot | Q2QPW2 | 0.0 | C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A0E0RHX5 | 0.0 | A0A0E0RHX5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G15060.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-125 | CCCH-type zinc finger protein with ARM repeat domain |