PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G13110.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 818aa    MW: 90819.5 Da    PI: 8.2934
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G13110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-2460161199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  ORUFI12G13110.1  60 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKHLVAGDAFIFL--RG 149
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  ORUFI12G13110.1 150 ENGELRVGVRRA 161
                      9999*****996 PP
2Auxin_resp111.86.6e-37186268183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s+seFvv+++ ++++lk++ s+GmRfkm fe+e+++e+r++Gt+vgv d+dp+ W +SkWrsLk
  ORUFI12G13110.1 186 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLK 268
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.18E-4153189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-4253175IPR015300DNA-binding pseudobarrel domain
CDDcd100176.14E-2258160No hitNo description
PfamPF023625.9E-2260161IPR003340B3 DNA binding domain
SMARTSM010191.1E-2360162IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84360162IPR003340B3 DNA binding domain
PfamPF065073.2E-34186268IPR010525Auxin response factor
PfamPF023091.2E-11613710IPR033389AUX/IAA domain
PROSITE profilePS5174523.837625709IPR000270PB1 domain
SuperFamilySSF542775.89E-12627701No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MNVELKAEPD TDEVYAQLTL LPEKQQDGNG SGNGNVSKDK VEEEEVVPPA ATERPRVHSF  60
CKTLTASDTS THGGFSVLRR HADECLPPLD MSQHPPTQEL VAKDLHGVEW RFRHIFRGQP  120
RRHLLQSGWS VFVSAKHLVA GDAFIFLRGE NGELRVGVRR AMRQQANIPS SVISSHSMHL  180
GVLATAWHAV NTGTMFTVYY KPRTSPSEFV VPRDLYKESL KRNHSIGMRF KMTFEGEEAA  240
EQRFTGTIVG VGDSDPSGWA DSKWRSLKVR WDEAASVPRP DRVSPWQIEP ANSPSPVNPL  300
PAPRTKRARP NVLASSPDLS AVNKEVASKV MANSQQNGLP RAFHSQENMN LRSRFGDSNE  360
LNTSQKLTMW SLGSNQEKNN VSVQRELGSQ SWMQMRRPDG SSEILSGFQP LKDTRNPLSS  420
FTSQISGNRS NTWNTINVHY PDQNANHNMY PGTWSLMPPN TGFGVNQQNY LMTPDITLPQ  480
RSLNAKFGGN GAFTSLRAHG IDQRSSGWLG HIEPSSHIDD ASSSLIKPQP LVIDHNVQKA  540
KGSSCMLFGI SLDSPAKPEL LISPPSVAFD GKLQQDALEE DECSDPSKTV KPLDGAQHDS  600
AREKHQSCPD GTKNIQSKQQ NGSSRSCKKV HKQGIALGRS IDLTKFTCYD ELIAELDQMF  660
DFNGELNSSS KNWMVVYTDN EGDMMLVGDD PWNEFCNMVH KIFIYTREEV QKMNPGALNS  720
RSFVVCKSRR RHIHGRKESF RGVVVVAGAL YVSGKPRSTP FVDGACPGIS CPLFVFDKFW  780
VCFVEVLSYC MICPVVVKGA EAKLPRPVRL LACALPPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-136129578359Auxin response factor 1
4ldw_A1e-136129578359Auxin response factor 1
4ldw_B1e-136129578359Auxin response factor 1
4ldx_A1e-136129578359Auxin response factor 1
4ldx_B1e-136129578359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652540.0AK065254.1 Oryza sativa Japonica Group cDNA clone:J013002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A0E0RH950.0A0A0E0RH95_ORYRU; Auxin response factor
STRINGORUFI12G13110.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]