PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G09450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 528aa MW: 57208 Da PI: 6.5588 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 109 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ ORUFI12G09450.1 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.9 | 1.8e-08 | 239 | 261 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H ORUFI12G09450.1 239 QEECKYYSTPGGCKFGKACKYLH 261 699******************** PP | |||||||
3 | zf-CCCH | 34.6 | 3.3e-11 | 286 | 310 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ ORUFI12G09450.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 433 | 459 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ ORUFI12G09450.1 433 PGQPECQHFVKSGFCKFRMKCKYHHPR 459 5789*********************96 PP | |||||||
5 | zf-CCCH | 29.8 | 1e-09 | 478 | 503 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++r+G Ck+G+ C ++H++ ORUFI12G09450.1 478 DQPVCTYYSRYGVCKFGPACAYNHPF 503 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.258 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-4 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-6 | 239 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 242 | 262 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 284 | 311 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-8 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 287 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 290 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 432 | 460 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 474 | 502 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 476 | 504 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 478 | 503 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQAP KEEYGSYVPD 180 ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE 240 ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK 300 YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI 360 APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG 420 HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP 480 VCTYYSRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111498 | 0.0 | AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620303.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A0E0RFZ0 | 0.0 | A0A0E0RFZ0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G09450.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-59 | C3H family protein |
Publications ? help Back to Top | |||
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