PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G02010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 382aa    MW: 43601.5 Da    PI: 8.0937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G02010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06137158627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      Cr+++++G+Ck+   Ck++H++
  ORUFI12G02010.1 137 CRYYMKFGECKHMTFCKYNHPK 158
                      ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.319131159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSTKFLDPGD QVGQLRSTQT TSKRKAASRK GQREQRVNAR LQEERRKVRA VPRAADMAFA  60
ESIWTFMPGK KGSVVQGPNT RTLTNAHDGI LDDINCAQIA GKHVGDHSNC ANVIKAGVIS  120
LLGKLVQYPE RPGEPFCRYY MKFGECKHMT FCKYNHPKDR FSCKTTNTIR SESLCLHDQQ  180
TTILENQFGL PSLVDKATAN TTNLVASASS SMTPDEIGEG KNNPDEVFVC ICGEKLLFHT  240
NFNTTAVKEL VVFALQRRNI KLIPMEYERM DELIDRAVRD NNNDLFYYVN LPPELINPYK  300
DTWQYLNDTF GDPPSWIADI SWVPDMWKTY NYSPNNNSTL WTPRYTLDLN SCSHFARNFL  360
NHFGREVSLF LIIILTFLYE PV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-131AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005071e-131BX000507.2 Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005581e-131BX000558.5 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1227_F03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-131CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619118.11e-109putative zinc finger CCCH domain-containing protein 64
SwissprotA3CEM40.0C3H64_ORYSJ; Putative zinc finger CCCH domain-containing protein 64
TrEMBLA0A0E0RDA10.0A0A0E0RDA1_ORYRU; Uncharacterized protein
STRINGORUFI12G02010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.25e-10zinc finger nuclease 3