PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G01770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 373aa    MW: 41252.2 Da    PI: 4.2502
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G01770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-1279136155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  ORUFI12G01770.1  79 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 136
                      57*****************99554433744577777********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-1679174No hitNo description
PfamPF008472.4E-1079136IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1679146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-1380145IPR001471AP2/ERF domain
SMARTSM003801.1E-2380150IPR001471AP2/ERF domain
PROSITE profilePS5103219.46780144IPR001471AP2/ERF domain
PRINTSPR003672.7E-68192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-6146172IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-5146174IPR016177DNA-binding domain
PRINTSPR003672.7E-6154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTEKS TGKAKRPKKE  60
SKEVADPSSN GGGGGKRSSI YRGVTRHRWT GRFEAHLWDK NCSTSLQNKK KGRQGAYDSE  120
EAAARAYDLA ALKYWGPETV LNFPVNTQEE AAKAYDLAAI EYRGANAVTN FDISCYLDQP  180
QLLAQLQQEP QLLAQLQQEP QVVPALHEEP QDDDRSENAV QELSSSEANT SSDNNEPLAA  240
DDSAECMNEP LPIVDGIEES LWSPCLDYEL DTMPGAYFSN SMNFSECNSM NFSEWFNDEA  300
FEGGMEYLFE GCSSMAEYNL FEECNMLEKD ISDFLDKDIS DFLDKDISIS DRERISPQAN  360
NISCPQKMIS VCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005090.0BX000509.2 Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619972.11e-133AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
TrEMBLA0A0E0RD660.0A0A0E0RD66_ORYRU; Uncharacterized protein
STRINGORUFI12G01770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-27AP2 family protein