PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G25330.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 427aa    MW: 46260.2 Da    PI: 9.4938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G25330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000774567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++Fs+   L  H  +H
  ORUFI11G25330.1 45 FQCRTCGRRFSTFQALGGHRTSH 67
                     89**********99998888777 PP
2zf-C2H216.72e-0599121123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+F +   L  H+r+H
  ORUFI11G25330.1  99 HRCDMCGKVFATGQALGGHMRRH 121
                      79********************9 PP
3zf-C2H211.60.00084335357123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg++F+++  L  H  +H
  ORUFI11G25330.1 335 FECRTCGRRFPSHQALGGHRTSH 357
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-94469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.35E-84567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-894121No hitNo description
PfamPF139121.1E-1198122IPR007087Zinc finger, C2H2
SMARTSM003550.002899121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.47199121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139122.6E-9334359IPR007087Zinc finger, C2H2
SMARTSM003550.092335357IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325335362IPR007087Zinc finger, C2H2
SuperFamilySSF576678.13E-7335397No hitNo description
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
SMARTSM003551.1375397IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-9375399IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099375402IPR007087Zinc finger, C2H2
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEVATNTATR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL  60
GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGASTPVVHR CDMCGKVFAT GQALGGHMRR  120
HRPLVSRNGT MSTTWTAAAA ATTMSGSSSE ERDDDDDDVH NYNFIHFLPV TDRSLLTDVR  180
QSGGSARLPL VKFNAARGSW GTANIDGGTA WVPPPLAPPP HHMAAGRGPR GKRRKGPRAM  240
TWHPEAPGCS RDSRDSDVFV VVTAMDQQED YTSDLQLELE EEEDDNQLSQ LAELDVQLSL  300
SLACGSTTAM SSSGDEEDAE PRRRRRDEEA AAAAFECRTC GRRFPSHQAL GGHRTSHLRP  360
TTNKRRPGPS KPLIHACEVC GLGFQMGQAL GGHMRRHRPR NIDLGHKQIV MPEIRPSSSL  420
QLLDLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340450.0AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK2433070.0AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.15e-90zinc finger protein ZAT8
TrEMBLA0A0E0RCA30.0A0A0E0RCA3_ORYRU; Uncharacterized protein
STRINGORUFI11G25330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.19e-21C2H2 family protein