PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G16290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 782aa MW: 87234.3 Da PI: 7.4541 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.1e-24 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + + ORUFI11G16290.1 67 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 157 99*****************************7333.34459************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ ORUFI11G16290.1 158 NGELRVGVRRA 168 999*****996 PP | |||||||
2 | Auxin_resp | 117 | 1.5e-38 | 193 | 275 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp Wp+SkWrsLk ORUFI11G16290.1 193 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 275 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-42 | 60 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-41 | 62 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-22 | 65 | 167 | No hit | No description |
SMART | SM01019 | 9.9E-24 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-21 | 67 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-36 | 193 | 275 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.32E-11 | 638 | 719 | No hit | No description |
PROSITE profile | PS51745 | 21.936 | 643 | 727 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.0E-6 | 689 | 727 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEDNGSTEEE VPSAPAAGHV 60 RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGVEWRFR 120 HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQTNVPSSVI 180 SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY DRYMESLKQN YSIGMRFKMR 240 FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE ASSIPRPERV SPWQIEPAVS 300 PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE SEPNGTQRTF QTQENATPKS 360 GFGNSSELES AQKSIMRPSG FDREKNNTPI QWKLGSDGRM QMSKPESYSE MLSGFQPPKD 420 VQIPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP SSWSFMPPNT RLGLNKQNYS 480 MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EQYSGGWFGH MMPNSHMDDT QPRLIKPKPL 540 VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD GTPQTPGATE WRRPDVTEVE 600 KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV STRSCKKVHK QGIALGRSVD 660 LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG DMMLVGDDPW IEFCDMVHKI 720 FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC LSTSFAPVQP DGTGYLSCYL 780 AT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-150 | 1 | 297 | 64 | 354 | Auxin response factor 1 |
4ldw_A | 1e-150 | 1 | 297 | 64 | 354 | Auxin response factor 1 |
4ldw_B | 1e-150 | 1 | 297 | 64 | 354 | Auxin response factor 1 |
4ldx_A | 1e-150 | 1 | 297 | 64 | 354 | Auxin response factor 1 |
4ldx_B | 1e-150 | 1 | 297 | 64 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ306306 | 0.0 | AJ306306.1 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617186.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Refseq | XP_015617187.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Swissprot | Q2R3F5 | 0.0 | ARFW_ORYSJ; Auxin response factor 23 | ||||
TrEMBL | A0A0E0R937 | 0.0 | A0A0E0R937_ORYRU; Auxin response factor | ||||
STRING | ORUFI11G16290.2 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |