PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G13960.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 388aa    MW: 41974.4 Da    PI: 8.1281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G13960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.7e-115982326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  ORUFI11G13960.2 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                     789********************8 PP
2zf-CCCH391.3e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ORUFI11G13960.2 104 QPECQYYLKTGTCKFGATCKFHHPR 128
                      799********************96 PP
3zf-CCCH24.74.2e-08150169322
                      S---SGGGGTS--TTTTT-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCk 22 
                      +++C +++rtG+Ck+G++C+
  ORUFI11G13960.2 150 EKECAYYLRTGQCKFGSTCH 169
                      679****************8 PP
4zf-CCCH39.87.7e-13255280227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ORUFI11G13960.2 255 DQPECQFYMKTGDCKFGAVCKFHHPK 280
                      689*********************96 PP
5zf-CCCH38.61.7e-12300326127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  ORUFI11G13960.2 300 PGEPICTFYSRYGICKFGPNCKFDHPM 326
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-45683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8685684IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-46283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244101129IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6104130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5107129IPR000571Zinc finger, CCCH-type
SMARTSM003561.6147171IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.657147175IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-6150169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511253281IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5253280IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9255280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5256281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4259280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7299326IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10301326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4304324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCHS SYAQVIVPPG  180
LVQVPGWNPY AAQIGSSSSD DQQRTAGGAQ YYTGSRHSET PNMGDQGMFS SYQAGSVPLG  240
LYTVQRESIF PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP  300
GEPICTFYSR YGICKFGPNC KFDHPMGTVM YGLATSPTGD VSARRMLAPV PAHSEVSPDN  360
VSGRSRRITH SDSQQIPSGE RGTEREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0J1T90.0A0A0E0J1T9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R8970.0A0A0E0R897_ORYRU; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-142zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]