PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G12850.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 507aa    MW: 52220.3 Da    PI: 7.966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G12850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000783273811155
                      HHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +            +      Ka +L + ++Y++sLq
  ORUFI11G12850.1 327 VRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 381
                      6******************777877766664333333568888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.347316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-4326386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9326398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-10326397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-7328385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHAMAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGGGVHKA  60
ALMDELASRL GGVCGGGLGG GGVPSPPSSS RYASCYSTPV GSPCKPAPAL PVPSLLAAAD  120
AMIAERAARM SCLAAAGHGG GKLSRAASSQ SLLAETAAAG GVHQLPASDG SSSDAPCRKR  180
KAPCAKARGK DAATTIAKVL PLLSAPPLQS RRRTSPETMV NFPQSPEPGT KAKKCKLSAD  240
AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE PPKDYIHVRA RRGQATDSHS LAERVKAAGI  300
DAANHNFFFS SILAFADAIA AVFHLQVRRE KISERMKLLQ DLVPGCNKVA KFSQKINLNF  360
TLVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDA SDPIMPAPLS  420
LPPPPPPLSY SPEGASPGIC YASSQGTAMQ SVVTSTKHLE TAPTFANHHV IPVPSLDGFH  480
SAHSQAGSCM WEDDLQSVVQ MGFRGNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465230.0AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBankAK2889700.0AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615633.10.0transcription factor BHLH089-like isoform X2
TrEMBLA0A0E0R7X20.0A0A0E0R7X2_ORYRU; Uncharacterized protein
STRINGORUFI11G12850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-44bHLH family protein