PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G09500.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 967aa    MW: 107442 Da    PI: 6.5089
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G09500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.53e-29613663252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  ORUFI11G09500.2 613 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 663
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.348602683IPR003035RWP-RK domain
PfamPF020424.4E-26616663IPR003035RWP-RK domain
SuperFamilySSF542777.2E-24860955No hitNo description
Gene3DG3DSA:3.10.20.2402.0E-24866948No hitNo description
SMARTSM006661.4E-25869951IPR000270PB1 domain
PROSITE profilePS5174526.274869951IPR000270PB1 domain
PfamPF005646.3E-19869950IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MLRRCSHPFL RYLQSVIKAV RIEEMDGGGT PDGDPVPDMD MLMLSSALDG LDSYTDLVAG  60
SSVVDSIFSA LTCFPPSQER LLHVSTAVGS SSRQDDADVS ITEEGTTRTR SDRAAGLASG  120
EPVAVGIGSV PKPFDGVTLT ERMLRALAML KEASGGEAIL VQVWMPVRNG EQHVLTTSDQ  180
PFLLDQKLTG YREVSRQFTF SAEEGPGLFP GLPGRVFMSG MPEWTSNVMY YHGSEYLRVD  240
YARRHEVRGS LAMPVFNSSG GSCCAVLEVV MTREKDNFCL EMVNVSNALQ SCYGYFFHLR  300
VLIIVSIRVT FCYKVHFMIE LASELNSDTV ILQSVQLSTA NAWRHSQSYS RDQKLALMEI  360
FDVLQAVCQA HLLPLALAWI PVCSKRDVLV SIEYGAKFGK RNKEVLCIEE SACYVNDTRV  420
RDFVQVCAEH PLEKGQGVAG NAYLSNNPFF SSDVKDYDMH AYPLVNHARK FGLHAAVAIR  480
LRSTYTKNDD YVLEFFLPVL CKGGEEQQLL LDSISTTMRK VCKSLRTVSD AELKEDVTRK  540
PSNENRSGTR CPSPVNLIYS GREIDVSNET KTNTPLEYQI EGIDEQLSDT KSTNKLIKCS  600
NASDGEKRRS STEKSVSLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GISRWPSRKI  660
KKVNRSLKKI QNVISSVHGV EGVLKYDPST GCLISSVSPS IEPVLMNVEH KGSDPLPIES  720
ELPHLNFEPD CDAYRREHAG QDVLHKLQNK QNGEINFDMD DGELFRNSHS TRTLSGAFCE  780
DMSNGLYVAR EMTCVAKTGT RTERLEHKPS SRDSFSAPQE YRMESETDKS NKNSKQSLPS  840
SSSMTDCSTS SGETFKSIKS QSANESNTTV VVKASYKNDT IRFKLLPSMK YEQLLEEIAK  900
RLKLSVGVFQ LKYKDDEGDW VILASDADLQ ECLEILDTTR LHILKLQVQD VVCPIGSSSG  960
SCSMLRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648590.0AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616880.10.0protein NLP2-like isoform X1
RefseqXP_015616881.10.0protein NLP2-like isoform X1
TrEMBLA0A0E0R6P20.0A0A0E0R6P2_ORYRU; Uncharacterized protein
STRINGORUFI11G09500.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein