PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G09150.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 424aa MW: 46132.8 Da PI: 4.5769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G09150.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	223	270	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++++ f L++++P+ K++Ka+iL +++ Y+k+L+ ORUFI11G09150.1 223 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 270 5899*********************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.339	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-17	223	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.66E-14	223	274	No hit	No description
Pfam	PF00010	3.6E-9	224	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	224	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-14	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MYDDNGAADL PTSQSASIKV SEDPALVDRI TASLWDTPPR AAFSSEAGVA DIVVFEDLDH 60 GNTAVEATTT MVPGEPEPHA VAGGEVAECE SNAHNDLEQI TMDDIGELYS LCEELDVLDD 120 DSSSWVADPW SSFQLVPTAE ATDVDDAVVA ALGAIDGSCR PSPSSFVAWK RTPDSDEVQA 180 VPLISGEPPQ KLLKKAVAGA GAWMNNADGS AATMTTDQGS SIKNHVMSER RRREKLKEMF 240 LILKSVVPSI HKVDKASILA ETIAYLKELE KRVEELESSS QPSPRPMETT RRRCCKSTGK 300 KVSAGARAKR KAPAPEDTDG ERRHCVSNVN VTIMDNKELL LELQCQWKEL LMTRVFDAIK 360 GVSLDVLSVQ ASTSDGLLGL KIQATWTEDT SLRSSSQRLR ARSRYAASSI YLSINHSIYV 420 YLEF

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MYDDNGAADL PTSQSASIKV SEDPALVDRI TASLWDTPPR AAFSSEAGVA DIVVFEDLDH  60
GNTAVEATTT MVPGEPEPHA VAGGEVAECE SNAHNDLEQI TMDDIGELYS LCEELDVLDD  120
DSSSWVADPW SSFQLVPTAE ATDVDDAVVA ALGAIDGSCR PSPSSFVAWK RTPDSDEVQA  180
VPLISGEPPQ KLLKKAVAGA GAWMNNADGS AATMTTDQGS SIKNHVMSER RRREKLKEMF  240
LILKSVVPSI HKVDKASILA ETIAYLKELE KRVEELESSS QPSPRPMETT RRRCCKSTGK  300
KVSAGARAKR KAPAPEDTDG ERRHCVSNVN VTIMDNKELL LELQCQWKEL LMTRVFDAIK  360
GVSLDVLSVQ ASTSDGLLGL KIQATWTEDT SLRSSSQRLR ARSRYAASSI YLSINHSIYV  420
YLEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	ERRRRE
2	229	234	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC145364	0.0	AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616671.1	0.0	anthocyanin regulatory Lc protein
Swissprot	P13526	5e-75	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0E0R6K1	0.0	A0A0E0R6K1_ORYRU; Uncharacterized protein
STRING	ORUFI11G09150.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	6e-19	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]