PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G08300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 420aa MW: 44369.2 Da PI: 7.345 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.5 | 2.8e-32 | 159 | 213 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e + ORUFI11G08300.1 159 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 213 689*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-29 | 160 | 212 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-30 | 161 | 211 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 162 | 211 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-24 | 162 | 213 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.86E-21 | 307 | 381 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-32 | 311 | 382 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-27 | 320 | 376 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MLVLLPDTPQ SLSLSHFSLP LNELQTRTEA SPASSASAAA TRIFAVRRQQ QEQEGEEEEE 60 EFEFQERMDL SGAQGELPIP MHASAAASPF AGMGAHGGAG GGHVVELHRH EHVGNNGQAM 120 AMASPPPTNV AVAAEQEGSP VAGKKRGGMA VVGGGGGVAV KYRECLKNHA AAIGGNATDG 180 CGEFMPSGEE GSLEALKCSA CGCHRNFHRK EADDLDADSC AAALRAAAGR HHHLLGPALP 240 HHHHKNGGGL LVAGGDPYGA AYAAARALPP PPPPPPHGHH HHHQIIMPLN MIHTSESDEM 300 DVSGGGGGVG RGGGSSSSSK KRFRTKFTAE QKARMLEFAE RVGWRLQKLD DAMVHHFCQE 360 IGVKRRVLKV WMHNNKHNLA KKPLPSSPPP PPQIPPMSMP PSPPPMPMPM PPSPPQLKLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 319 | 378 | 16 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876888.1 | 1e-166 | zinc-finger homeodomain protein 4 | ||||
Swissprot | Q53N87 | 1e-168 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A0E0R6A1 | 0.0 | A0A0E0R6A1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G08300.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-26 | homeobox protein 31 |