PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G08300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 420aa    MW: 44369.2 Da    PI: 7.345
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G08300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.8e-32159213358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  ORUFI11G08300.1 159 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 213
                      689*************************9.999********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-29160212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-30161211IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735162211IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-24162213IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.86E-21307381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-32311382IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-27320376IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLVLLPDTPQ SLSLSHFSLP LNELQTRTEA SPASSASAAA TRIFAVRRQQ QEQEGEEEEE  60
EFEFQERMDL SGAQGELPIP MHASAAASPF AGMGAHGGAG GGHVVELHRH EHVGNNGQAM  120
AMASPPPTNV AVAAEQEGSP VAGKKRGGMA VVGGGGGVAV KYRECLKNHA AAIGGNATDG  180
CGEFMPSGEE GSLEALKCSA CGCHRNFHRK EADDLDADSC AAALRAAAGR HHHLLGPALP  240
HHHHKNGGGL LVAGGDPYGA AYAAARALPP PPPPPPHGHH HHHQIIMPLN MIHTSESDEM  300
DVSGGGGGVG RGGGSSSSSK KRFRTKFTAE QKARMLEFAE RVGWRLQKLD DAMVHHFCQE  360
IGVKRRVLKV WMHNNKHNLA KKPLPSSPPP PPQIPPMSMP PSPPPMPMPM PPSPPQLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-243193781675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876888.11e-166zinc-finger homeodomain protein 4
SwissprotQ53N871e-168ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0E0R6A10.0A0A0E0R6A1_ORYRU; Uncharacterized protein
STRINGORUFI11G08300.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-26homeobox protein 31