PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G05730.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 402aa    MW: 45332.5 Da    PI: 10.019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G05730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1830119198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ff vl++    ++ r+ +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++++  GWkeFv++n ++ g f+vF++d+rs+f   
  ORUFI11G05730.1  30 FFRVLLT--LQSLERMKIPSSFN-QClQNQPTG--MVSLVDRSGNKWSAEL--TSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQF--S 114
                      5666633..4456679******8.564767666..8***************..*********************************99999..8 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v+vf+
  ORUFI11G05730.1 115 VTVFE 119
                      88876 PP
2B352.31e-16296387398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ s+v     + +p +f++e+   ++++k +tl d++g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v++
  ORUFI11G05730.1 296 QIMMESYVYVGFFMNIPCEFVRECL--PRTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHI 385
                      6789999999**************5..345678***************995555556799*********************998444..57887 PP

                      E- CS
               B3  97 fr 98 
                      +r
  ORUFI11G05730.1 386 YR 387
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.77628121IPR003340B3 DNA binding domain
CDDcd100171.02E-1728118No hitNo description
Gene3DG3DSA:2.40.330.105.8E-2129121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2229125IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.1E-1530121IPR003340B3 DNA binding domain
PfamPF023621.5E-1637118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-26286387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-25287387IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-23292387No hitNo description
SMARTSM010195.0E-15294389IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352294389IPR003340B3 DNA binding domain
PfamPF023627.0E-15296387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVVREKQGGR MGKGKGKEKE GDINCFGRSF FRVLLTLQSL ERMKIPSSFN QCLQNQPTGM  60
VSLVDRSGNK WSAELTSDSE GFFFVHGWKE FVRDNSIQCG QFLVFTYDKR SQFSVTVFEP  120
SGIDKISTFS AHPSKNVIIK TESDEGGMVT AAITTEKMAP ALKENNGITG KRTRDVDYLM  180
EDRVVVFKKS SEANVCESSR RKRAGASAGK SKVTSTSHNS TRGSSCSSDE DNSSSKSPNP  240
PFLMRFLSGE VSRRGVSKGQ RQLTVISQRR PVTEAERDHA LQRAREFKSK NPFAVQIMME  300
SYVYVGFFMN IPCEFVRECL PRTNKRITLW DPQGKAWEVN YVYYSDRSVG SFSGGWGKFA  360
VGNNLEKFDV CVFELVQKDN IKVHIYRVVP EITPHKLRSD PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1326738822142B3 domain-containing transcription factor VRN1
4i1k_B1e-1326738822142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019410.0AK101941.1 Oryza sativa Japonica Group cDNA clone:J033074I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0E0R5A80.0A0A0E0R5A8_ORYRU; Uncharacterized protein
STRINGORUFI11G05730.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-19B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]