PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G05080.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 333aa MW: 35725 Da PI: 5.4489

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G05080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.9e-51	9	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+elv++yL++k+ g +l + vi+evd+yk++PwdLp+++ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s ORUFI11G05080.1 9 LPPGFRFHPTDDELVMYYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPVGS 101 79***********************999.89***********8888999*********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v +kk Lvfy g+ pkg+kt+W+mheyrl ORUFI11G05080.1 102 --PRAVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133 ..678*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-61	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	9	166	IPR003441	NAC domain
Pfam	PF02365	9.8E-26	10	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MECGGALQLP PGFRFHPTDD ELVMYYLCRK CGGLPLAAPV IAEVDLYKFN PWDLPERAMG 60 GEKEWYFFSP RDRKYPNGQR PNRAAGTGYW KATGADKPVG SPRAVAIKKA LVFYAGKPPK 120 GVKTNWIMHE YRLADVDRSA AARKLSKSSH NALRLDDWVL CRIYNKKGVI ERYDTVDAGE 180 DVKPAAAAAA AAKGGRIGGG GGAAAMKLEL SDYGFYDQEP ESEMLCFDRS GSADRDSMAR 240 LHTDSSGSEH VLSPSPSPDD FPGGGGGGDH DYAESQPSGG CGGWPGVDWA AVGDDGFVID 300 SSLFELPSPA AFSRGGGDGA AFGDMFTYLQ KPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-77	7	172	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	201	GGRIGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269\|PubMed:20632034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU167548	0.0	KU167548.1 Oryza sativa cultivar Moctuyen transcription factor (NAC5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617286.1	0.0	NAC domain-containing protein 71
Swissprot	Q53NF7	0.0	NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBL	A0A0E0R521	0.0	A0A0E0R521_ORYRU; Uncharacterized protein
STRING	ORUFI11G05080.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11804	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	8e-92	NAC domain containing protein 32

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sperotto RA, et al. Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Kan CC,Chung TY,Juo YA,Hsieh MH Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]