PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G04240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 409aa MW: 42892 Da PI: 9.0391 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.2e-06 | 190 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdC+++F +++L+ H +t H ORUFI11G04240.1 190 FSCPDCDEVFVKPDSLELHRSTrH 213 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.349 | 190 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 213 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 7.91E-16 | 215 | 408 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 3.2E-5 | 336 | 407 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS 60 ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA 120 SSSFNSVMTA ATSATATTTT SSSATSPPSA LSSPLSSIGG SFRAMQIRKL SGCYLHCHSV 180 LDPRTLAAVF SCPDCDEVFV KPDSLELHRS TRHAVSELGA DDTSRNIVEI IFQSSWLKKN 240 APVCRIERIL KVQSSDKTIK RFEQHKEAVK EKARSAGDEA GRNPRCVADG NELLRFHCTT 300 FACSLGLAGG TALCCASSVD GNGRITTMAT SGRAHDTAEV SPDGEKRAML VCRVVAGRVK 360 KLHSSNSSED HDCDSVSPCS EGVYSDLDEL FVFSPRAILP CFVVIYSGY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 98 | SGGGGGGDGGGGGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110948 | 0.0 | AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616600.1 | 0.0 | uncharacterized protein LOC4349886 | ||||
TrEMBL | A0A0E0R4Q2 | 0.0 | A0A0E0R4Q2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G04240.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-77 | C2H2-like zinc finger protein |