PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G04010.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 506aa    MW: 57184 Da    PI: 6.474
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G04010.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.6e-27194290186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  ORUFI11G04010.2 194 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 287
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  ORUFI11G04010.2 288 HMD 290
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-20192315No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MWAPWSVGPA CQRETSCSAR PNISAEAEAE AEAEADCLLA GVQFSRRIPL LYSCASSCTP  60
VSILYGTNKK LKCLGDRFGE MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ  120
PQIPGNFTIP MDRVTEPDNI SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHNMNEDAA  180
DGKDKKGSPW HRMKWTDSMV KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV  240
MGERGCHVSP QQCEDKFNDL NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR  300
KILNSKHLFY EEMCSYHNNN RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ  360
SEDSDYEENE EEHRAVDTYI RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI  420
NKPFPDGCDL ALVQKDLALK AAAIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA  480
LENEQMMLQN KQLQINSIQD RVYARW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0E0R4L90.0A0A0E0R4L9_ORYRU; Uncharacterized protein
STRINGORUFI11G04010.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-89sequence-specific DNA binding transcription factors