PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G04010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 532aa    MW: 60645.4 Da    PI: 8.8602
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G04010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.47.1e-27211307186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  ORUFI11G04010.1 211 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 304
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  ORUFI11G04010.1 305 HMD 307
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-20209332No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MTCGPPGRWA PRVSEKPRAR RGPIFRRRLR RRRRRRRIVS SPAFSSVAGY RCSSRPRTPS  60
RARGLPRLYS CASSCTPVSI LYGTNKKLKC LGDRFGEMEG SNPPGNMTQG PSYGSLDLHG  120
ISKQMHPPNS GNQGFNQPQI PGNFTIPMDR VTEPDNISDG VQLGQHGKIA HHHHHHRHHS  180
KNHGSDEEEH NMNEDAADGK DKKGSPWHRM KWTDSMVKLL ITAVSYTGED PGADLGGGRR  240
NYSMMQKKGK WKAISKVMGE RGCHVSPQQC EDKFNDLNKR YKRLTDILGR GTACNVVENH  300
SLLDHMDISE KMKEDARKIL NSKHLFYEEM CSYHNNNRIS LPEDPALQQS LQLALRCKED  360
NDFMRHASGD AELDDDQSED SDYEENEEEH RAVDTYIRGP SMHKRMWHVV DHGDVGFVTS  420
CSNDGSGRSD PYDVLDINKP FPDGCDLALV QKDLALKAAA IQKHRLQIET KAVQLAKQRL  480
KWEMFRKNKD LELEKLALEN EQMMLQNKQF ELDLRHKELE LEIKIKGNAN HP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12535RRRLRRRRRRR
22633RRLRRRRR
32634RRLRRRRRR
42734RLRRRRRR
52736RLRRRRRRRR
62936RRRRRRRR
73036RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0E0R4L80.0A0A0E0R4L8_ORYRU; Uncharacterized protein
STRINGORUFI11G04010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-92sequence-specific DNA binding transcription factors