PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G03710.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 902aa MW: 97983.5 Da PI: 6.3047

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G03710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00074	707	744	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq ORUFI11G03710.1 707 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 744 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.3E-30	6	162	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.493	694	743	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-4	707	756	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010078	Biological Process	maintenance of root meristem identity
GO:0010089	Biological Process	xylem development
GO:0010479	Biological Process	stele development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG 60 CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM 120 SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK 180 NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL 240 LKIAQLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL 300 LMNNISQLEY GDGAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF 360 DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER 420 GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN 480 MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD 540 VPESSIHADS APLFSSRDNE LYSGIFSLTD TDQLLDAVIS NVNPAGKQSS DDSASCKTSL 600 TDIPATSYLC SKEMKQCGSS GVPSVLIKNE SAQFIKQPCL AENAEDGCLS QNNGMHKSQI 660 RLWIESGQSM KCESASASNS KGLDTPSKAN RKRSRPGESP KPRPKDRQLI QDRIKELREM 720 VPNGAKCSID ALLEKTVKHM LFLQSVTKHA DKLKDSTESK ILGNENGPVW KDYFEGGATW 780 AFDVGSQSMT CPIIVEDLDR PRQMLVEMIC EDRGIFLEIA DFIKGLGLTI LRGAMEARKS 840 KIWARFTVEA NRDVTRMEIF LSLVRLLEPN CDSSGAAENA NNVNMPLGLV HQPVIPATGR 900 IQ

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK  180
NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL  240
LKIAQLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL  300
LMNNISQLEY GDGAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF  360
DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER  420
GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN  480
MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD  540
VPESSIHADS APLFSSRDNE LYSGIFSLTD TDQLLDAVIS NVNPAGKQSS DDSASCKTSL  600
TDIPATSYLC SKEMKQCGSS GVPSVLIKNE SAQFIKQPCL AENAEDGCLS QNNGMHKSQI  660
RLWIESGQSM KCESASASNS KGLDTPSKAN RKRSRPGESP KPRPKDRQLI QDRIKELREM  720
VPNGAKCSID ALLEKTVKHM LFLQSVTKHA DKLKDSTESK ILGNENGPVW KDYFEGGATW  780
AFDVGSQSMT CPIIVEDLDR PRQMLVEMIC EDRGIFLEIA DFIKGLGLTI LRGAMEARKS  840
KIWARFTVEA NRDVTRMEIF LSLVRLLEPN CDSSGAAENA NNVNMPLGLV HQPVIPATGR  900
IQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133217	0.0	AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616921.1	0.0	transcription factor LHW isoform X1
TrEMBL	A0A0E0R4H5	0.0	A0A0E0R4H5_ORYRU; Uncharacterized protein
TrEMBL	Q2RAA8	0.0	Q2RAA8_ORYSJ; Expressed protein
STRING	ORUFI11G03710.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-54	conserved peptide upstream open reading frame 7