PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G03420.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 294aa MW: 31246.9 Da PI: 6.5128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G03420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.9	2.3e-41	18	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+ ORUFI11G03420.1 18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAlageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 111 69*************************99***********84455333335569***************************999 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ ORUFI11G03420.1 112 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149 998868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-45	15	181	IPR003441	NAC domain
PROSITE profile	PS51005	46.099	17	182	IPR003441	NAC domain
Pfam	PF02365	9.4E-23	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MATTRSGVGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP 60 SQLAALAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV 120 IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA MLHPMAPPRL RNELGVCRVY 180 ISTGTLRSFD RRPLDNQAAA PTQQQVMPSL TAAAAVNTNL CGGGGGVVFA GAQGDSSRDC 240 SSSSGSRELA GGADGSEDDA IDWNSLISSA TADDLGFNTV VGFDPSIVGS WPQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
4dul_A	3e-29	6	180	2	163	NAC domain-containing protein 19
4dul_B	3e-29	6	180	2	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109939	0.0	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615861.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0R4E1	0.0	A0A0E0R4E1_ORYRU; Uncharacterized protein
TrEMBL	Q53QG7	0.0	Q53QG7_ORYSJ; NAC-domain containing protein 90, putative, expressed
STRING	ORUFI11G03420.1	0.0	(Oryza rufipogon)
STRING	OS11T0154500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	8e-65	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]