PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G00360.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 348aa MW: 38648 Da PI: 8.4063 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 207 | 300 | 7 | 100 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ +lal+++e ORUFI11G00360.3 207 LLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQLALAHAE 300 68***************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.743 | 200 | 301 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-38 | 207 | 298 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MATAAAAGDG DEHLLSLFAS ALSHRSCLAM RYEALLLRQA KYSDDLHLQV SNEEWLTFAK 60 DSLDNGFYTI ASKAFANALL HIDPSHPGYL DSTNSILKKD KINDISGLQN LAKSLSARHS 120 VQAQSAEYMK RKASGVDEKC NLHLGKTKLP GSLMFRLGIK TRNIQKLRCS REKEACTATA 180 SNGGKRERER DTVRVVQAAA AAVHVGLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS 240 NVSKMLLDVP PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQNQVSQL QMQLALAHAE 300 TAALQLQLQQ QHQDQDDHHH QQCILENAAA HHQLMLQEAF LKKESMWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-38 | 198 | 300 | 8 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-38 | 198 | 300 | 8 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241761 | 0.0 | AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000494 | 0.0 | BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000497 | 0.0 | BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0R352 | 0.0 | A0A0E0R352_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G00360.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-38 | LBD family protein |