PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G00320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 321aa    MW: 35054.6 Da    PI: 7.4797
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G00320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97.3e-3161114255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  ORUFI11G00320.1  61 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 114
                      9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-2957115IPR009057Homeodomain-like
PROSITE profilePS5129411.9257117IPR017930Myb domain
SuperFamilySSF466893.4E-1558115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2260116IPR006447Myb domain, plants
PfamPF002491.3E-862113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSAGKEEEE EDGGGGAPAA AANNYGSSTT SSTTEEEGSG ESRRRTSSSS SVRPYVRSKN  60
PRLRWTPELH LSFVRAVDRL GGQDRATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDES  120
GQVIGGESWR SDDHLQMQGG GHGGQAYNLG HLSLPALHHR SITAGSGTIF QSRFGNSWSP  180
WRCHGSYWLP AGHHLLVGSK PYYPPAAEAE APFRRSSARY VARANTSNHP DFVQGSSSSP  240
DDNIMNHQRP VLKEMICSEG SNHQEGPLNL DLSLDICPRG EKRKRECSWR KQEEDHDHAT  300
VAIGADQEAE SCATGLSLSL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411710.0AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617115.10.0probable transcription factor RL9 isoform X1
TrEMBLA0A0E0IWY80.0A0A0E0IWY8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R3440.0A0A0E0R344_ORYRU; Uncharacterized protein
TrEMBLA2ZH980.0A2ZH98_ORYSI; Uncharacterized protein
TrEMBLQ2RBM70.0Q2RBM7_ORYSJ; Myb-like DNA-binding domain, SHAQKYF class family protein, expressed
STRINGORUFI11G00320.10.0(Oryza rufipogon)
STRINGONIVA11G00030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-38G2-like family protein