PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G21010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 298aa    MW: 32869.3 Da    PI: 6.9862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G21010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30151209259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  ORUFI10G21010.1 151 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 209
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374145211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30148211IPR003657WRKY domain
SuperFamilySSF1182904.71E-26148211IPR003657WRKY domain
SMARTSM007741.4E-36150210IPR003657WRKY domain
PfamPF031061.6E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG EDQLAAVSQQ  60
AEQQQQSMVD ASAACDLLHA LLPPPPVVQV QQQGASRTRT TIEEDTTGDG EELFAGAHYV  120
VPPIKRSCKD GWILTRTGIY IYIXGGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK  180
GCSARKQVER SRADPTMLVV TYTSDHNHPW PTHRNALAGS TRPSSSNSSN IRLQDSTPVH  240
HQSQTGHDRL TTTHLKQEDV IISPSLLQPD HHQLCTIIDT KHHLLFHQDY PHSFGFFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-211522121880Disease resistance protein RRS1
5w3x_D3e-211522121880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.11e-173protein WRKY1
RefseqXP_015613759.11e-173protein WRKY1
TrEMBLA0A0E0R2Y90.0A0A0E0R2Y9_ORYRU; Uncharacterized protein
STRINGORUFI10G21010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-47WRKY DNA-binding protein 35