PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI10G20190.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

STAT

Protein Properties

Length: 890aa MW: 97948.3 Da PI: 6.1464

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G20190.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	186.7	2.8e-58	458	578	1	121
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k ORUFI10G20190.2 458 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 550 79********7.*****************9****************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltk 121 +y+flea+skpirCisr+r++r+++++k ORUFI10G20190.2 551 RYTFLEAYSKPIRCISRNRTSRPLGSAK 578 ********************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	2.38E-7	241	378	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF55550	6.63E-5	807	876	IPR000980	SH2 domain
PROSITE profile	PS50001	9.366	814	890	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MGLTYSPTNR GRRTKPSIAA SGDGGGGAGI CGGGGDRYYE LSDVRIELDL REEVRLCFWL 60 LLSSSARPSS AIPSSGGCRE GIVDSGVPSP GQIQTMPSCS KHGNDRMRTL SNFVAGIFSH 120 FPSVEYSHPE GSPEKTTGYQ KFFRLGLYGC TGPDTSRLGR RNHDGEEVLP RPPIAVLDAE 180 SDHLKGLKQK EITIVKQQLK EEEGLTSRRG ERESGTKPSP PPTSRSAAAR PPMAAPPGRG 240 GADGYCDLPD VRLELDPGKV RGGGGGFTVC FWLYLSSSAR PSSVILHQVA EGGGDKVPFL 300 ALGEGNKLIL FPLLGFHREA PTPDSSYPWT DITNLTEVNE CPLDNWFHVG CEVTENIMRL 360 HIDGDLVAET HLHSLYNEPD YQDDANQINL LGSEDKLEGY VYNMELSCML GNIQQQFAKN 420 PPFKLSIDYS CSDGIEEGDD GIWNIVGGKA SCRRNFILEV ILVDAFGEAA KDREIVASLV 480 YADNGALVEK SRDDSEPPLL ISCDGIEYPA VSRPLPIIRG RALFKLKISQ LSSKCDNKLF 540 RIFFSTLGMK RYTFLEAYSK PIRCISRNRT SRPLGSAKRI GSASMDDIKS INNCEGFGHS 600 GKANGRLQTH DPSSVNKHAK KMVLDKGAQD VMVSDSTASD YDSMDAGSSW SLSDGDDVES 660 FSDAEIFRYC LDGTHERSKF LRAAAPSVNE DDLIKLANQV SLYSGCTHHR NQILISKQLL 720 QEGADIWSII SKNNERALWS SAVPEMKAKF LEIVHPSNRG LSEQDFEVLR GIAGCGDDIG 780 RDEFDKLWSW LYPVAIALSK DKINRLWDFT AHRWIEGLIT LQETENALRS SRDRLMKPGT 840 FVLRFPTTRS WPHPDAGSLV VTYVGSDNSI HHRLLSLDVR VDRLPSSMQS

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MGLTYSPTNR GRRTKPSIAA SGDGGGGAGI CGGGGDRYYE LSDVRIELDL REEVRLCFWL  60
LLSSSARPSS AIPSSGGCRE GIVDSGVPSP GQIQTMPSCS KHGNDRMRTL SNFVAGIFSH  120
FPSVEYSHPE GSPEKTTGYQ KFFRLGLYGC TGPDTSRLGR RNHDGEEVLP RPPIAVLDAE  180
SDHLKGLKQK EITIVKQQLK EEEGLTSRRG ERESGTKPSP PPTSRSAAAR PPMAAPPGRG  240
GADGYCDLPD VRLELDPGKV RGGGGGFTVC FWLYLSSSAR PSSVILHQVA EGGGDKVPFL  300
ALGEGNKLIL FPLLGFHREA PTPDSSYPWT DITNLTEVNE CPLDNWFHVG CEVTENIMRL  360
HIDGDLVAET HLHSLYNEPD YQDDANQINL LGSEDKLEGY VYNMELSCML GNIQQQFAKN  420
PPFKLSIDYS CSDGIEEGDD GIWNIVGGKA SCRRNFILEV ILVDAFGEAA KDREIVASLV  480
YADNGALVEK SRDDSEPPLL ISCDGIEYPA VSRPLPIIRG RALFKLKISQ LSSKCDNKLF  540
RIFFSTLGMK RYTFLEAYSK PIRCISRNRT SRPLGSAKRI GSASMDDIKS INNCEGFGHS  600
GKANGRLQTH DPSSVNKHAK KMVLDKGAQD VMVSDSTASD YDSMDAGSSW SLSDGDDVES  660
FSDAEIFRYC LDGTHERSKF LRAAAPSVNE DDLIKLANQV SLYSGCTHHR NQILISKQLL  720
QEGADIWSII SKNNERALWS SAVPEMKAKF LEIVHPSNRG LSEQDFEVLR GIAGCGDDIG  780
RDEFDKLWSW LYPVAIALSK DKINRLWDFT AHRWIEGLIT LQETENALRS SRDRLMKPGT  840
FVLRFPTTRS WPHPDAGSLV VTYVGSDNSI HHRLLSLDVR VDRLPSSMQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070829	0.0	AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614085.1	0.0	SH2 domain-containing protein A isoform X2
TrEMBL	A0A0E0R2N4	0.0	A0A0E0R2N4_ORYRU; Uncharacterized protein
STRING	ORUFI10G20190.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-142	SH2 domain protein B